{ "_id": "6a2517144b233be19838bbb9", "Package": "enrichit", "Title": "'C++' Implementations of Functional Enrichment Analysis", "Version": "0.1.4", "Authors@R": "person(given = \"Guangchuang\", family = \"Yu\",\nemail = \"guangchuangyu@gmail.com\", role = c(\"aut\", \"cre\"))", "Maintainer": "Guangchuang Yu ", "Description": "Fast implementations of functional enrichment analysis\nmethods using 'C++' via 'Rcpp'. Currently provides\nOver-Representation Analysis (ORA) and Gene Set Enrichment\nAnalysis (GSEA). The multilevel GSEA algorithm is derived from\nthe 'fgsea' package. Methods are described in Subramanian et\nal. (2005) and Korotkevich et al.\n(2021) .", "License": "Artistic-2.0", "Encoding": "UTF-8", "VignetteBuilder": "quarto", "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-07 06:54:38 UTC", "User": "root" }, "Author": "Guangchuang Yu [aut, cre]", "Config/pak/sysreqs": "cmake make libuv1-dev", "Repository": "https://guangchuangyu.r-universe.dev", "Date/Publication": "2026-04-08 21:05:22 UTC", "RemoteUrl": "https://github.com/cran/enrichit", "RemoteRef": "HEAD", "RemoteSha": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "MD5sum": "8e20bb3161f9942b0cb34d34430cc53f", "_user": "guangchuangyu", "_type": "src", "_file": "enrichit_0.1.4.tar.gz", "_fileid": "117d3e6d86c34e9b1adf4396f83d9bfb512a44a07d329a2b40f5950fdb0104cd", "_filesize": 166969, "_sha256": "117d3e6d86c34e9b1adf4396f83d9bfb512a44a07d329a2b40f5950fdb0104cd", "_created": "2026-06-07T06:54:38.000Z", "_published": "2026-06-07T07:00:36.408Z", "_distro": "noble", "_jobs": [ { "job": 79938946969, "time": 168, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7461659936" }, { "job": 79938946964, "time": 182, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7461661201" }, { "job": 79938946958, "time": 211, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7461664772" }, { "job": 79938946968, "time": 179, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7461660839" }, { "job": 79938946961, "time": 152, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7461657644" }, { "job": 79938946953, "time": 254, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7461669367" }, { "job": 79938946951, "time": 180, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7461660732" }, { "job": 79938946957, "time": 286, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7461672996" }, { "job": 79938721572, "time": 255, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7461640526" }, { "job": 79938946944, "time": 155, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7461658015" }, { "job": 79938946955, "time": 246, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7461668406" }, { "job": 79938946952, "time": 170, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7461659686" }, { "job": 79938946949, "time": 194, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7461662594" } ], "_buildurl": "https://github.com/r-universe/guangchuangyu/actions/runs/27085365013", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/enrichit", "_commit": { "id": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "author": "Guangchuang Yu ", "committer": "cran-robot ", "message": "version 0.1.4\n", "time": 1775682322 }, "_maintainer": { "name": "Guangchuang Yu", "email": "guangchuangyu@gmail.com", "login": "guangchuangyu", "twitter": "@guangchuangyu", "description": "Professor of Bioinformatics at Southern Medical University.", "uuid": 626539 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "methods", "role": "Imports" }, { "package": "Rcpp", "version": ">= 1.0.10", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "yulab.utils", "version": "> 0.2.1", "role": "Imports" }, { "package": "AnnotationDbi", "role": "Suggests" }, { "package": "clusterProfiler", "role": "Suggests" }, { "package": "DOSE", "role": "Suggests" }, { "package": "gson", "role": "Suggests" }, { "package": "qvalue", "role": "Suggests" }, { "package": "quarto", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 64, "_updates": [ { "week": "2025-52", "n": 1 }, { "week": "2026-02", "n": 1 }, { "week": "2026-03", "n": 1 }, { "week": "2026-06", "n": 1 }, { "week": "2026-09", "n": 1 }, { "week": "2026-11", "n": 1 }, { "week": "2026-15", "n": 1 } ], "_tags": [ { "name": "0.0.8", "date": "2025-12-22" }, { "name": "0.0.9", "date": "2026-01-10" }, { "name": "0.1.0", "date": "2026-01-18" }, { "name": "0.1.1", "date": "2026-02-02" }, { "name": "0.1.2", "date": "2026-02-26" }, { "name": "0.1.3", "date": "2026-03-10" }, { "name": "0.1.4", "date": "2026-04-08" } ], "_stars": 0, "_contributors": [ { "user": "guangchuangyu", "count": 7, "uuid": 626539 } ], "_userbio": { "uuid": 626539, "type": "user", "name": "Guangchuang Yu", "description": "Professor of Bioinformatics at Southern Medical University." }, "_downloads": { "count": 17053, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/enrichit" }, "_searchresults": 16, "_quarto": true, "_topics": [ "quarto", "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/enrichit.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "guangchuangyu", "_cranurl": false, "_releases": [ { "version": "0.0.8", "date": "2025-12-22" }, { "version": "0.0.9", "date": "2026-01-10" }, { "version": "0.1.0", "date": "2026-01-18" }, { "version": "0.1.1", "date": "2026-02-02" }, { "version": "0.1.2", "date": "2026-02-26" }, { "version": "0.1.3", "date": "2026-03-10" }, { "version": "0.1.4", "date": "2026-04-08" } ], "_exports": [ "EXTID2NAME", "geneID", "geneInCategory", "gsea", "gsea_gson", "gseaScores", "gsfilter", "ora", "ora_gson", "setReadable", "show", "summary" ], "_help": [ { "page": "compareClusterResult-class", "title": "Class \"compareClusterResult\" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis.", "topics": [ "compareClusterResult-class", "plot,compareClusterResult-method", "show,compareClusterResult-method", "summary,compareClusterResult-method" ] }, { "page": "enrichit_params", "title": "Common parameters for enrichit functions", "topics": [ "enrichit_params" ] }, { "page": "enrichResult-class", "title": "Class \"enrichResult\" This class represents the result of enrichment analysis.", "topics": [ "enrichResult-class", "show,enrichResult-method", "summary,enrichResult-method" ] }, { "page": "EXTID2NAME", "title": "EXTID2NAME", "topics": [ "EXTID2NAME" ] }, { "page": "geneID", "title": "geneID generic", "topics": [ "geneID" ] }, { "page": "geneInCategory", "title": "geneInCategory generic", "topics": [ "geneInCategory" ] }, { "page": "gsea", "title": "Gene Set Enrichment Analysis (GSEA)", "topics": [ "gsea" ] }, { "page": "gsea_gson", "title": "gsea_gson", "topics": [ "gsea_gson" ] }, { "page": "gseaResult-class", "title": "Class \"gseaResult\" This class represents the result of GSEA analysis", "topics": [ "gseahResult-class", "gseaResult-class", "show,gseaResult-method", "summary,gseaResult-method" ] }, { "page": "gseaScores", "title": "Calculate GSEA Running Enrichment Scores", "topics": [ "gseaScores" ] }, { "page": "gsfilter", "title": "gsfilter", "topics": [ "gsfilter" ] }, { "page": "ora", "title": "Over-Representation Analysis (ORA)", "topics": [ "ora" ] }, { "page": "ora_gson", "title": "ora-gson", "topics": [ "ora_gson" ] }, { "page": "setReadable", "title": "setReadable", "topics": [ "setReadable" ] }, { "page": "show-methods", "title": "show method", "topics": [ "show" ] }, { "page": "summary-methods", "title": "summary method", "topics": [ "summary" ] } ], "_readme": "https://github.com/cran/enrichit/raw/HEAD/README.md", "_rundeps": [ "cli", "digest", "fs", "rappdirs", "Rcpp", "rlang", "yulab.utils" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "enrichit.qmd", "filename": "enrichit.html", "title": "enrichit", "engine": "quarto::html", "headings": [ "Introduction", "Installation", "Over-Representation Analysis (ORA)", "Method", "Example", "Gene Set Enrichment Analysis (GSEA)", "Working with GSON", "Session Info" ], "created": "2025-12-22 17:37:25", "modified": "2025-12-22 17:37:25", "commits": 1 } ], "_score": 7.263290047767649, "_indexed": true, "_nocasepkg": "enrichit", "_universes": [ "guangchuangyu" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.4", "date": "2026-06-07T06:57:26.000Z", "distro": "noble", "arch": "aarch64", "commit": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "fileid": "25b66293f1244f2fb3bb3f6206fcf1d4a0f9c5ce67c498fd859d52a6ed773df7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guangchuangyu/actions/runs/27085365013" }, { "r": "4.7.0", "os": "linux", "version": "0.1.4", "date": "2026-06-07T06:57:32.000Z", "distro": "noble", "arch": "x86_64", "commit": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "fileid": "e893cd5ac12113c5fccc0c19bb84b47dc972c845a9636aea79ff3f6dea2377e0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guangchuangyu/actions/runs/27085365013" }, { "r": "4.6.0", "os": "linux", "version": "0.1.4", "date": "2026-06-07T06:58:05.000Z", "distro": "noble", "arch": "aarch64", "commit": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "fileid": "bda3653abd1a4e933d96e40ef01560231c469dca2cabcb9256e3af71c2e08ba1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guangchuangyu/actions/runs/27085365013" }, { "r": "4.6.0", "os": "linux", "version": "0.1.4", "date": "2026-06-07T06:57:30.000Z", "distro": "noble", "arch": "x86_64", "commit": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "fileid": "040c2837edf661945ac10892bd58c2273b8d95ad9f468b326c2b44d33741230c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guangchuangyu/actions/runs/27085365013" }, { "r": "4.5.3", "os": "mac", "version": "0.1.4", "date": "2026-06-07T06:57:12.000Z", "arch": "aarch64", "commit": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "fileid": "4ad59ac323dd4fcf5243c22924b7fdf5418b1d668f30b8ef94edf7af21465835", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guangchuangyu/actions/runs/27085365013" }, { "r": "4.5.3", "os": "mac", "version": "0.1.4", "date": "2026-06-07T06:58:22.000Z", "arch": "x86_64", "commit": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "fileid": "d0a031c83968d0228033f8633efb59b8d9c82bae511db2c0b737fd9096a0c067", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guangchuangyu/actions/runs/27085365013" }, { "r": "4.6.0", "os": "mac", "version": "0.1.4", "date": "2026-06-07T06:57:28.000Z", "arch": "aarch64", "commit": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "fileid": "d8db7a7ec694046a3e336fd2a91f83af970eec99732b61aaa50d6b84d15b66a0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guangchuangyu/actions/runs/27085365013" }, { "r": "4.6.0", "os": "mac", "version": "0.1.4", "date": "2026-06-07T06:58:46.000Z", "arch": "x86_64", "commit": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "fileid": "cc145d64df0ff6c7a0125ac50cde3c7867988455386d06aad4c40be4a1c05ba2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guangchuangyu/actions/runs/27085365013" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.4", "date": "2026-06-07T06:57:28.000Z", "arch": "emscripten", "commit": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "fileid": "a3bcca78bb7ab25355a98daf27d204797dfa7eadc26036e5e574b5e9717ed387", "status": "success", "buildurl": "https://github.com/r-universe/guangchuangyu/actions/runs/27085365013" }, { "r": "4.7.0", "os": "win", "version": "0.1.4", "date": "2026-06-07T06:57:50.000Z", "arch": "x86_64", "commit": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "fileid": "f8f13bba5868a0607270d5519976ecc7354183b30bd9710e25e8a0029030562f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guangchuangyu/actions/runs/27085365013" }, { "r": "4.5.3", "os": "win", "version": "0.1.4", "date": "2026-06-07T06:56:53.000Z", "arch": "x86_64", "commit": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "fileid": "a7cec28c252e3951b96a149e12ac330bf0ab1cab424baea25547df869491f42d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guangchuangyu/actions/runs/27085365013" }, { "r": "4.6.0", "os": "win", "version": "0.1.4", "date": "2026-06-07T06:57:09.000Z", "arch": "x86_64", "commit": "72a2b68530e809d8769cc2fb8d45b59c06fcdbc0", "fileid": "e3a12b7e08666eb7e14e690aa4b1aba2e2ee929cd282ffdcd5059eb6216fedac", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guangchuangyu/actions/runs/27085365013" } ] }