Changes in version 0.1.4 (2026-04-08)                  

  - fix GSON helper functions (2026-04-06, Mon)
      - correct TERM2NAME() for GSON objects to map gsid to term names
        properly
      - correct TERMID2EXTID() for GSON objects to return gene vectors
        by requested term order
      - return character(0) for missing terms to keep downstream
        behavior stable
      - resolves malformed Description.* columns in downstream
        clusterProfiler::groupGO()

                 Changes in version 0.1.3 (2026-03-10)                  

  - fix gsea_gson() (2026-03-10, Tue)
      - force sorting of geneList to ensure result object is consistent
        with input
      - resolves issue with enrichplot::gseaplot showing incorrect
        metric/color alignment

                 Changes in version 0.1.2 (2026-02-26)                  

  - improve robustness of calculate_qvalue() (2026-02-02, Mon)
      - handle missing qvalue package gracefully
      - retry with different parameters if qvalue() fails
      - handle invalid p-values (NA, infinite, out of range)
  - validate p-values in ora_gson() (2026-02-02, Mon)
      - ensure p-values are within [0, 1] range
      - warn and report invalid p-values
  - optimize ORA p-value calculation in C++ (2026-02-02, Mon)
      - use phyper instead of summing dhyper for better performance and
        precision

                 Changes in version 0.1.1 (2026-02-01)                  

  - update setReadable() to support converting gene ID to other types
    (not limited to SYMBOL) (2026-01-21, Wed)
  - add organism slot in compareClusterResult (2026-01-20, Tue)

                 Changes in version 0.1.0 (2026-01-18)                  

  - fix bugs in gsea_gson() and ora_gson() (2026-01-11, Sun)
      - handle missing columns (e.g., qvalues) gracefully by filling
        with NA
      - handle NA or duplicate gene set IDs in result rownames to
        prevent errors
  - improve robustness of calculate_qvalue() (2026-01-11, Sun)
      - return NA instead of NULL when qvalue calculation fails
  - update ora_gson() output columns (2026-01-11, Sun)

                 Changes in version 0.0.9 (2026-01-10)                  

  - add leading edge analysis for GSEA (2026-01-10, Sat)

                 Changes in version 0.0.8 (2025-12-22)                  

  - fixed bugs of multilevel GSEA in p value calculation (2025-12-10,
    Wed)
      - by learning the source code of 'fgsea'

                        Changes in version 0.0.7                        

  - add gseaScores function (2025-12-07, Sun)
      - to calculate GSEA scores for a single gene set

                        Changes in version 0.0.6                        

  - add vignette (2025-12-07, Sun)

                        Changes in version 0.0.5                        

  - implement multi-level GSEA algorithm (2025-12-06, Sat)

                        Changes in version 0.0.4                        

  - implement a simplified adaptive early-stopping GSEA algorithm
    (2025-12-05, Fri)
      - For each gene set:
      - 1.  Run initial batch (e.g., 1000 permutations)
      - 2.  If p-value > threshold (e.g., 0.05), stop
      - 3.  If significant, increase permutations geometrically
            (2x, 4x, 8x...)
      - 4.  Continue until p-value stabilizes or max permutations
            reached

                        Changes in version 0.0.3                        

  - implement ora_gson and gsea_gson (2025-12-05, Fri)
      - as replacement for enricher_internal and GSEA_internal
  - mv helper functions and class definitions from DOSE to enrichit
    (2025-12-05, Fri)
      - to extend this package as the base package for the
        clusterProfiler family

                        Changes in version 0.0.2                        

  - gsea function (2025-12-04, Thu)
      - Gene Set Enrichment Analysis (GSEA) using C++ via Rcpp.

                        Changes in version 0.0.1                        

  - ora function (2025-12-03, Wed)
      - Fast Over-Representation Analysis (ORA) using C++ via Rcpp.