oncoplot object in 'aplot' and 'aplotExtra' (2023-07-18, Tue)gglist object (2023-06-26, Mon)bbplot object (2021-09-02, Thu)yulab.utils (2021-08-20, Fri)... parameter in as.ggplot (2021-08-06, Fri)envir to base2grob (2021-08-04, Wed, #11)patchwork object supported (2021-05-11, Tue)aplot object supported (2020-03-27, Fri)
as.ggplot (2020-03-16, Mon)hjust and vjust parameters in as.ggplot (2020-03-11, Wed)grid2grob for all plot generated by grid (2019-08-21, Wed)
as.grob method for Heatmap object (defined in ComplexHeatmap package) (2019-08-06, Tue)as.grob method for eulergram object (defined in eulerr package) (2019-05-09, Thu)
as.grob method for pheatmap object (2018-08-03, Fri)
magick-image to grob and ggplot object. (2018-04-25, Wed)as.grob as S3 Generics.as.grob by combining ggimage::toGrob and base2grob package which was deprecated
as.grob can convert base plot or grid plot (e.g. vcd, UpSetR packages) to
grob objectas.ggplot supports all as.grob-supported plots.I figured out a way to embed base plot (vennpie) to grid plot (upset) when
developing upsetplot function in ChIPseeker package for visualizing overlap
of ChIPseq data in 2015, http://guangchuangyu.github.io/2015/07/upsetplot-in-chipseeker/.
I developed a subview function in ggtree package in 2015, for embeding
subplots,
https://github.com/YuLab-SMU/ggtree/commit/2ab2876d5e92454869c3307ea6f3c8e2656630ef.
This function was re-implemented as geom_subview and packed in the ggimage
package.
In the early of 2017, I started to develop R script to produce ggtree sticker.
@lgatto first came out with an idea of makeing an R package for producing hex
sticker by packing my script into a function, https://github.com/Bioconductor/BiocStickers/issues/12. I have
several ideas to improve the package, including producing print-ready figure,
employing modular design and supporting grammar of graphics, as well as supporting
subplot generated by base and lattice. I started to develop the
hexSticker package, https://github.com/GuangchuangYu/hexSticker/issues/2,
with base plot, lattice, ggplot2 and image file supported as subplot, which was
actually implemented in ggimage (toGrob function, image file are supported
by geom_image).
I wrote a blog
post, http://guangchuangyu.github.io/cn/2018/03/five-questions-of-meme/, to
ask questions based on the meme package to help users understand ggplot2.
After I wrote the sentence:
if you know how
ggsaveworks, you can even extend it to support base plot
I started to extend ggsave to support base plot by using formula or
expression, e.g. ggsave(~base_plot).
After that, I asked myself, why not extending cowplot to support base plot
with the fact that I already have source code to convert base plot to grob
object (ggimage:::toGrob). Then I developed the base2grob package and submit
it to CRAN.
I wrote a blog post, http://guangchuangyu.github.io/cn/2018/04/ggvenn/, to
introduce ggvenn function (in yyplot package, only available on GitHub), and started
to play with the UpSetR package. I believe upset plot contains too much
empty space and can embed a venn plot as I did in 2015 with vennpie. I created a
PR, https://github.com/hms-dbmi/UpSetR/pull/112, to make it possible to
capture upset output and be able to be converted to grob object. I thought it would be more
easy if I further convert the object to ggplot then I can directly use
ggimage::geom_subview() to embed ggvenn inside upset plot. With this idea,
I started to implement as.ggplot function.
Then, I suddenly realized that I should packed as.ggplot, ggimage:::toGrob and
base2grob into a single package. That's why we have ggplotify, which
contains as.grob to convert plots to grob and as.ggplot to convert plots
to ggplot objects.