1. ChIPseeker::gsminfo
    Information Datasets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|103398 x 14
  2. ChIPseeker::tagMatrixList
    Information Datasets
    json| rda| rds
    list
  3. ChIPseeker::ucsc_release
    Information Datasets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|112 x 4
  4. clusterProfiler::DE_GSE8057
    Datasets gcSample contains a sample of gene clusters.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1251 x 3
  5. clusterProfiler::gcSample
    Datasets gcSample contains a sample of gene clusters.
    json| rda| rds
    list
  6. DOSE::DGN_EXTID2PATHID
    Datasets
    json| rda| rds
    list
  7. DOSE::DGN_PATHID2EXTID
    Datasets
    json| rda| rds
    list
  8. DOSE::DGN_PATHID2NAME
    Datasets
    json| rda| rds
    character
  9. DOSE::geneList
    Datasets
    json| rda| rds
    numeric
  10. DOSE::NCG_EXTID2PATHID
    Datasets
    json| rda| rds
    list
  11. DOSE::NCG_PATHID2EXTID
    Datasets
    json| rda| rds
    list
  12. DOSE::VDGN_EXTID2PATHID
    Datasets
    json| rda| rds
    list
  13. DOSE::VDGN_PATHID2EXTID
    Datasets
    json| rda| rds
    list
  14. DOSE::VDGN_PATHID2NAME
    Datasets
    json| rda| rds
    character
  15. epiSeeker::demo_bmdata
    demo base modification data
    rda| rds
    bmData
  16. epiSeeker::demo_peak
    demo peak file
    rda| rds
    GRanges
  17. epiSeeker::gsminfo
    Information Datasets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|103398 x 14
  18. epiSeeker::peakAnno
    Example data of peak annotation
    rda| rds
    csAnno
  19. epiSeeker::peakAnnoList
    Example data of a list of peak annotation
    rda| rds
    list
  20. epiSeeker::pwm_obj
    motif reference for Homo sapiens
    rda| rds
    PFMatrixList
  21. epiSeeker::seq2gene_result
    Result of seq2gene
    json| rda| rds
    character
  22. epiSeeker::tagMatrix
    Example data of tagMatrix
    csv| json| rda| rds
    matrix|664 x 500
  23. epiSeeker::ucsc_release
    Information Datasets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|112 x 4
  24. GOSemSim::gotbl
    Information content of GO terms
    csv| xlsx| json| ndjson| rda| rds
    data.frame|87439 x 5
  25. meshes::hsamd
    DATA Sets
    rda| rds
    GOSemSimDATA
  26. meshes::meshtbl
    DATA Sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|164135 x 3
  27. MicrobiomeProfiler::microbiota_taxlist
    Example data: a vector of 54 bacterial genera tested for significantly between T2D metformin samples
    json| rda| rds
    integer
  28. MicrobiomeProfiler::Psoriasis_data
    Example data: a vector of 134 significantly different functional COGs between Psoriasis patients and controls
    json| rda| rds
    character
  29. MicrobiomeProfiler::Rat_data
    Example data: a vector of 91 KEGG Orthologies (KOs) showing significant associations with weaning weight
    json| rda| rds
    character
  30. TDbook::AA_sequence
    Data set containing multiple sequence alignment information
    rda| rds
    AAbin
  31. TDbook::df_alleles
    Allele table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|386 x 385
  32. TDbook::df_alltax_info
    Data frame containing hierarchical relationship
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1351 x 7
  33. TDbook::df_bar_data
    Trait data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|386 x 2
  34. TDbook::df_barplot_attr
    Data set of the abundance of microbes at the body sites of greatest prevalence
    csv| xlsx| json| ndjson| rda| rds
    data.frame|332 x 3
  35. TDbook::df_Candidaauris_data
    Population genetics data No.1
    csv| xlsx| json| ndjson| rda| rds
    data.frame|305 x 20
  36. TDbook::df_difftax
    Data frame containing taxa and factor information and pvalue
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 3
  37. TDbook::df_info
    Sampling information data set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|386 x 6
  38. TDbook::df_inode_data
    Nodedata to be mapped to tree
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 6
  39. TDbook::df_NJIDqgsS
    Population genetics data No.2
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1832 x 12
  40. TDbook::df_ring_heatmap
    Data set of the abundance and types of microbes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2324 x 3
  41. TDbook::df_svl
    Data frame containing slv information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 1
  42. TDbook::df_tip_data
    Tipdata to be mapped to tree
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 10
  43. TDbook::df_tippoint
    Data set of the abundance and types of microbes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|332 x 4
  44. TDbook::dna_HPV58_aln
    A DNAbin class to store the aligned sequnces of species of HPV58.tree
    rda| rds
    DNAbin
  45. TDbook::text_RMI_tree
    Tree to display with symbolic points indicating partitioned bootstrap values
    json| rda| rds
    character
  46. TDbook::tree_anole
    Tree to color with continuous state transition in edges
    rda| rds
    phylo
  47. TDbook::tree_boots
    Tree to be mapped to data
    rda| rds
    phylo
  48. TDbook::tree_Candidaauris
    Tree No.1 to display with visualized population genetics data
    rda| rds
    phylo
  49. TDbook::tree_hmptree
    Tree to display with multiple graphs for multi-dimensional data
    rda| rds
    phylo
  50. TDbook::tree_HPV58
    Tree to display with dot and line plots of pairwise nucleotide sequence distances
    rda| rds
    phylo
  51. TDbook::tree_long_branch_example
    Tree to display with shrunk outlier long branch
    rda| rds
    phylo
  52. TDbook::tree_nex
    Tree to display with silhouettes from Phylopic
    rda| rds
    phylo
  53. TDbook::tree_NJIDqgsS
    Tree No.2 to display with visualized population genetics data
    rda| rds
    phylo
  54. TDbook::tree_nwk
    Tree to display with sampling information, SNP and Trait data
    rda| rds
    phylo
  55. TDbook::tree_seq_nwk
    Tree to display with multiple sequence alignment
    rda| rds
    phylo
  56. TDbook::tree_treenwk_30.4.19
    Tree to group and highlight
    rda| rds
    phylo