Basic Usage | Deconstructing Layers | 1. The Base Plot | 2. Customizing Edges | 3. Customizing Edge Labels | 4. Customizing Nodes (SNFG Symbols) | 5. Adding Text Labels | Putting It All Together: A Highly Customized Plot | Motif Highlighting
Package: gglycan 0.0.3
gglycan: Plot Glycans using 'ggplot2'
Plot glycans following the Symbol Nomenclature for Glycans (SNFG) using 'ggplot2'. SNFG provides a standardized visual representation of glycan structures.
Authors:
gglycan_0.0.3.tar.gz
gglycan_0.0.3.zip(r-4.7)gglycan_0.0.3.zip(r-4.6)gglycan_0.0.3.zip(r-4.5)
gglycan_0.0.3.tgz(r-4.6-any)gglycan_0.0.3.tgz(r-4.5-any)
gglycan_0.0.3.tar.gz(r-4.7-any)gglycan_0.0.3.tar.gz(r-4.6-any)
gglycan_0.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
gglycan/json (API)
| # Install 'gglycan' in R: |
| install.packages('gglycan', repos = c('https://guangchuangyu.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:391de0cc63. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 154 | ||
| source / vignettes | OK | 200 | ||
| linux-release-x86_64 | OK | 156 | ||
| macos-release-arm64 | OK | 127 | ||
| macos-oldrel-arm64 | OK | 131 | ||
| windows-devel | OK | 117 | ||
| windows-release | OK | 129 | ||
| windows-oldrel | OK | 114 | ||
| wasm-release | OK | 117 |
Exports:format_linkage_labelgeom_glycanget_hl_alphagglycanhighlight_motifmatch_snfg_styleread_glycanset_hl_alphasnfg_map
Dependencies:base64encbslibcachemclicpp11digestdplyrevaluatefarverfastmapfontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsggfunggiraphggplot2ggrepelggstarggtanglegluegridExtragtablehighrhtmltoolshtmlwidgetsigraphisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemimepillarpkgconfigpurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalessystemfontstibbletidyselecttinytexutf8vctrsviridisLitewithrxfunyamlyulab.utils
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Format Linkage Labels | format_linkage_label |
| Glycan Geometry Layer | geom_glycan |
| Get Highlight Alpha | get_hl_alpha |
| Plot Glycan Structure | gglycan |
| Identify Motif in Glycan Graph | highlight_motif |
| Match SNFG Style to Graph Nodes | match_snfg_style |
| Read Glycan Data | read_glycan |
| Set Highlight Alpha | set_hl_alpha |
| SNFG Symbol Mapping | snfg_map |
